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The opal Package

opal is an open, modular R package for fisheries stock assessment built on RTMB for automatic differentiation and gradient-based optimization.

The core workflow involves:

  1. Specifying a model — Define population dynamics, selectivity, biological parameters, and data likelihoods
  2. Running an optimization — Fit the model to data and estimate key parameters

See vignette("bet") for a detailed worked example.