Plot spawning biomass — plot_biomass

Plot the spawning biomass (tonnes) or relative spawning biomass by year for a single model run, a grid of model runs, or an MCMC.

Usage

plot_biomass_spawning(
  data_list,
  object_list,
  posterior = NULL,
  probs = c(0.025, 0.975),
  relative = TRUE,
  labels = NULL
)

data_list: a list containing the data that was passed to MakeADFun.
object_list: a list specifying the AD object created using the MakeADFun function.
posterior: an rstan objected created using the tmbstan function.
probs: a numeric vector of probabilities with values in [0,1] for plotting quantiles of the posterior distribution. Defaults to the 90% credible interval.
relative: if the plot should be relative spawning biomass.
labels: a vector of labels for the model runs.

a ggplot2 object.